#01Jul 21, 2026
cs.CL
Selection Shapes the Boundary: A Preregistered Replication of Monotonicity and Label Agreement in Unselected NLI Populations
Haram Choi
Prior work on human label variation (HLV) in natural language inference (NLI) has often relied on re-annotation resources that select items by disagreement level. An earlier study (arXiv:2607.15870) found that hypotheses containing non-upward monotonicity operators showed lower label agreement in ChaosNLI (Cliff's delta = -0.284), which is restricted to items whose majority label carries exactly three of five votes. We preregistered a replication of this boundary in the unselected populations that ChaosNLI was drawn from: the SNLI and MultiNLI development sets, using the same operator tagger and a four-level ordinal agreement outcome. The registered prediction fails. All seven contrasts return a positive Cliff's delta (non-upward items agree slightly more, not less), the only significant confirmatory contrast has the opposite sign to the registration, and every effect is far below our smallest effect size of interest (0.10). Robustness checks support the measurement: simulated tagger misclassification shrinks the effects rather than manufacturing them, and a manual re-tagging audit reaches four-class agreement of 0.875 on a fresh 200-item sample. We conclude that the earlier negative boundary is plausibly a structure conditional on low-agreement selection rather than a population-level property, and that HLV structure claims built on selected re-annotation resources should state their selection conditional explicitly.
#02Jul 21, 2026
cs.AI
BioSecBench-Surveillance: A Verifiable Benchmark for AI Agents in Pathogen Genomic Surveillance
Harmon Bhasin, Kevin Flyangolts, Dianzhuo Wang and 9 more
As pathogen genomic surveillance scales, the bottleneck is shifting from data generation to analysis. We present BioSecBench-Surveillance, a verifiable benchmark of 100 evaluations testing whether AI agents can infer the right analysis pipeline from raw sequencing data and surveillance context. Each evaluation gives an agent only the data and context a human analyst would have, then grades its structured answer deterministically. The tasks span seven categories, from taxonomic classification to genetic-engineering detection, across diverse sample types and sequencing technologies. Across 3,962 gradable attempts from sixteen model-harness pairs, the strongest configuration cleared only about half. Opus 4.8 with PI led at 50.2 percent, with a 95 percent confidence interval of 40.1 to 60.3 percent across 83 evaluations, tied with GPT-5.5 with Codex at 50.2 percent, with a 95 percent confidence interval of 40.8 to 59.6 percent, followed by Opus 4.7 with PI at 49.6 percent, with a 95 percent confidence interval of 40.0 to 59.2 percent, and Sonnet 4.6 with PI at 48.6 percent, with a 95 percent confidence interval of 38.9 to 58.3 percent. Even when agents invoked the correct workflows, their mistakes came from the choices around them, such as which references, thresholds, filters, and normalization to apply. BioSecBench-Surveillance provides a standard for measuring whether agents can be trusted to perform genomic surveillance when the next outbreak arrives.
#03Jul 21, 2026
cs.RO
From Distances to Trajectories: Real-Time Signed Distance Function Mapping and Distance-Accelerated Motion Planning for UAVs
Jason Stanley, Zhirui Dai, Qihao Qian and 6 more
Autonomous flight in cluttered environments requires a robot to build a geometric map of its surroundings and plan safe, dynamically feasible trajectories, all onboard and in real time. Conventional approaches treat mapping and planning as separate stages and often rely on binary occupancy for collision checking. We argue that these two stages should be co-designed around a single representation: a signed distance function (SDF). By encoding distance to the nearest obstacle, an SDF provides richer information for planning and trajectory optimization than occupancy alone. We develop an Octree REsidual Network (OREN) that pairs an explicit octree prior with an implicit neural residual to reconstruct SDFs online from point cloud observations with the efficiency of volumetric methods and the accuracy and differentiability of neural methods. In tandem, we develop Bubble$^\star$, a search-based planner that exploits the distance information to grow maximal collision-free balls, which we call bubbles, with formal guarantees of termination, completeness, and failure detection. Planning over a graph of bubbles significantly reduces collision checks compared to a grid-based A$^\star$ search and returns a bubble sequence that forms a safe corridor for trajectory optimization. We demonstrate the integrated OREN-Bubble$^\star$ approach onboard a quadrotor, navigating unseen indoor environments in real time under tight compute constraints. OREN improves SDF estimation by $22$% compared to baselines, while Bubble$^\star$ finds trajectories spanning $\approx 90$ m through a cluttered environment in $1$-$3$ sec., whereas baselines take up to $10$ sec. in the same environment.
#04Jul 21, 2026
cs.CL
Selective State-Space Adaptation and Retrieval for Language Model Reasoning
Atahan Dokme, Larry Heck
Low-rank adaptation introduces a static learned update applied identically to every input. The update provides task-level adaptation but does not explicitly represent token-level or instance-level state variation. A family of adapters is proposed that introduces selective state-space recurrence at two complementary granularities. At the token level, \textbf{MaLoRA} (Mamba-modulated low-rank adaptation) makes the adapter's scaling factor a dynamic input-dependent function with recurrent state across tokens, in contrast to the stateless modulators of prior work. At the context level, \textbf{MaRA} (Mamba Retrieval Adapter) tracks cross-segment state and selects the segments most relevant to the query, before the modulated language model generates its answer. Across three frozen backbones (Qwen-2.5-7B, Llama-3.1-8B, Gemma-2-9B) and two reasoning benchmarks (MuSiQue, 2WikiMultihopQA), the family improves reasoning accuracy on every cell of the $3{\times}2$ grid, by $+6.8$ F1 ($+10.5\%$ relative) on average and up to $+9.3$ F1 ($+18.2\%$ relative) on the hardest cell over the LoRA baseline, and the token-level gains carry to RULER QA-2 under length stress.
#05Jul 21, 2026
cs.LG
Riemannian Deep Learning:Modules, Networks, and Geometries
Chen Ziheng
Deep neural networks on manifold-valued representations have attracted growing interest, but many basic components remain tied to specific manifolds, rely on Euclidean approximations, or require costly and numerically fragile geometric operations. This thesis develops a unified framework for Riemannian deep learning from three complementary perspectives: reusable neural modules, manifold-specific network architectures, and the design of underlying geometries. It generalizes batch normalization from Euclidean spaces and individual manifolds to broad classes of Lie groups and gyrogroups, and extends multinomial logistic regression from Euclidean space to SPD manifolds and then to general Riemannian manifolds. It further develops neural networks for several important geometric representations, including an unconstrained model of hyperbolic space, Busemann-based hyperbolic learning, and full-rank correlation matrices. Finally, it introduces adaptive and computationally efficient Riemannian metrics on SPD manifolds, including learnable Log-Euclidean geometries and fast, stable Cholesky-based geometries. The proposed methods are supported by theoretical analysis and validated through numerical experiments and applications in vision, signal processing, graph learning, and genomics.