#01Aug 18, 2026
cs.CY
Traceable Trust for action-ready artificial intelligence in bioscience
Huayu Xin, Yizhi Cai, Mukilan Deivarajan Suresh and 9 more
Artificial intelligence (AI) is becoming part of the working infrastructure of the biosciences. AI models can predict biomolecular structures, design proteins, rank variants, annotate images, recommend strains and optimise experimental conditions. We argue that the decision to use an AI output to guide laboratory action is a key juncture for trustworthy research and should follow a defined, reviewable process. We propose Traceable Trust as a proportionate assessment-and-design framework for this output-to-action boundary. It asks what evidence supports the output, what capability is being claimed, what agency has been delegated, what threshold authorises action, who can override it and how outcomes inform later decisions. We illustrate the framework through three case studies spanning ecosystem resources, project design and laboratory action. Together, the cases show how trust can be documented where AI outputs begin to shape scientific work.
#02Aug 18, 2026
cs.LG
Why GPT-Style Models Do Not Directly Transfer to Symbolic Music: Compression in the Wrong Coordinate System
Yi Wang
GPT-style models achieve strong performance by representing language with finite vocabularies of reusable discrete tokens. This success has motivated symbolic music tokenizations to treat recurring musical structures, such as chords, motifs, and phrases, as reusable units analogous to linguistic tokens. However, tokenization derives its advantage not from reusable combinations alone, but from compression: effective compression requires coordinates in which recurring regularities form stable and predictable conditional distributions. The key problem is therefore not to find larger musical combinations, but to discover the coordinate system in which musical facts become predictively compressible. We formulate the Effectiveness--Losslessness Framework and define tokenization as the construction of a predictively effective and relationally lossless coordinate system. The Predictive Effectiveness Principle defines the Fact--Token Boundary: decoupling and denesting construct coordinate interfaces that expose predictive regularities. The Relational Losslessness Principle defines the Token--State Boundary: tokenization stops before context-dependent relations are fixed, leaving their computation to model states. Controlled symbolic-music experiments validate these boundaries. Effective coordinate construction improves predictive compressibility, while fixed relational projections constrain contextual modeling. Sequence compaction alone does not guarantee predictive compression, while preserving contextual freedom allows higher-order musical organization to emerge without explicit structural labels. These results reveal why GPT-style models do not transfer directly across modalities: architectures transfer, but tokenization interfaces do not. Tokenization must discover effective representations while preserving the relational freedom from which contextual structure can emerge.
#03Aug 18, 2026
cs.CL
Do Large Language Models Play Six Degrees of Separation? Measuring Topological Compression in Long-Context Manifolds
Md. Faiyaz Abdullah Sayeedi
Large Language Models (LLMs) demonstrate remarkable multi-hop reasoning capabilities over long contexts, yet the internal mechanisms enabling these distant cognitive leaps remain poorly understood. Traditional attention-based interpretability often fails to capture true semantic proximity due to routing artifacts like attention sinks. In this paper, we bypass attention weights to directly analyze the dynamic geometry of the hidden state manifold, proving that deep LLM latent spaces natively organize into Small-World networks. By sparsifying the continuous similarity matrices of long-context representations into unweighted graphs, we trace the connectivity between highly disjoint semantic anchors across two distinct architectures. Our findings reveal a sharp topological phase transition: while early syntactic layers remain entirely fractured, deep reasoning layers abruptly compress massive conceptual distances into highly navigable pathways strictly bounded by the "Six Degrees of Separation" limit (=< 6 semantic hops). Furthermore, we demonstrate the practical efficacy of this framework by applying it to zero-shot hallucination detection within Retrieval-Augmented Generation (RAG) using the RAGognize dataset. We show that factually grounded generations maintain structural integrity with their source context (approximately 3 hops), whereas hallucinations induce severe topological collapse. Ultimately, this work mathematically formalizes how transformers execute abstract reasoning and provides a novel, strictly geometric signature for evaluating factual reliability.
#04Aug 18, 2026
cs.CL
Chain-of-Experience for Continual LLM Improvement
Haoqin Tu, Yunhao Fang, Yizhong Wang and 2 more
Humans continuously learn from experience, whereas conventional large language model (LLM) evaluations ignore the models' ability to improve through inference-time interaction. In this paper, we study how LLMs learn from iterative experience at test time, a setting we refer to as Chain-of-Experience (CoE), where models accumulate experiential traces through iterative interactions with self or environmental feedback to form a continual improvement loop beyond zero-shot inference. We instantiate CoE with diverse feedback mechanisms, including model self-feedback and environmental signals such as correctness or public coding test pass rates, and evaluate across math, coding, and knowledge domains using 8 LLMs, including GPT-5, Gemini-2.5 Pro, Claude-4.5 Sonnet. Our study shows that leveraging iterative experience consistently outperforms feedback-free baselines, achieving substantial gains with self feedback alone, alongside a 5.6% overall improvement and 19% lower API cost across tasks and models. We further show that combining complementary feedback channels (e.g., model and correctness signals) yields additional gains, and that CoE delivers higher accuracy per token than existing test-time strategies. We observe a positive correlation between LLM base ability and improvement capacity, and show that models remain robust under weak or spurious feedback, with different feedback contributing to distinct improvement aspects and most gains emerging early in the iterations.
#05Aug 18, 2026
cs.CL
Language Has Two Parameters: Narrative-Induced Semantic Plasticity and Phase-Sensitive Interpretation
Hollis Robbins
Language has two parameters. Count how often words occur together and you estimate amplitude, the strength of association. Word embeddings and attention weights refine that count, which sums every writer in the corpus together. This paper claims a second parameter, phase, which signed weights learned from a corpus do not supply. Phase exists only between meanings: it determines how coactivated meanings combine, and it can reverse what a meaning contributes while that meaning stays fully present. A speaker can set phase in the signal through linguistic form; encounters install phase relations and history distributes them. Population averaging deletes history-indexed phase: agent-deindexed corpora identify the population marginal state and determine no individual or dyadic state, at any scale. The standard transformer has no explicit representation for phase in frozen inference, and the interpretability program measuring progress by monosemanticity is optimizing against it: the coexistence it treats as a defect is the condition of allusion, irony, and quotation. Six predictions test whether a suppressed meaning stays active, whether encounter order changes what a phrase does, whether marking the signal changes how a shared phrase is taken, and whether a model given a history is changed by it or only informed about it. The claim defended is the weak version: interpretation requires a second relational parameter, signed, persistent, and indexed to individuals and dyads. Quantum probability is one notation for the parameter; nothing in the formalism claims quantum processes in the brain. The strong version, that the quantum calculus constrains these phenomena as signed classical models do not, rests on an encounter-order constraint not yet derived. The architecture the theory calls for is a language model with agent-indexed, phase-bearing semantic states.